HL_9SRD_053

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9SRD|1|1|A|2154, 9SRD|1|1|C|2155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|2151
9SRD|1|1|U|2152
9SRD|1|1|A|2153
9SRD|1|1|A|2154
9SRD|1|1|C|2155
9SRD|1|1|U|2156
9SRD|1|1|A|2157
9SRD|1|1|U|2158
9SRD|1|1|A|2159
9SRD|1|1|A|2160
9SRD|1|1|C|2161

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain H

Dehydrogenase