HL_9SRD_055

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCGCGCAUGC

Length

10 nucleotides

Bulged bases

9SRD|1|1|C|2270, 9SRD|1|1|G|2271, 9SRD|1|1|C|2272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_055 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.2806

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9SRD|1|1|G|2267
9SRD|1|1|C|2268
9SRD|1|1|G|2269
9SRD|1|1|C|2270
9SRD|1|1|G|2271
9SRD|1|1|C|2272
9SRD|1|1|A|2273
9SRD|1|1|U|2274
9SRD|1|1|G|2275
9SRD|1|1|C|2276

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain Bb

Large ribosomal subunit protein eL32