HL_9SRD_061
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRD_061 not in the Motif Atlas
- Homologous match to HL_4V9F_058
- Geometric discrepancy: 0.165
- The information below is about HL_4V9F_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
9SRD|1|1|U|2555
9SRD|1|1|G|2556
9SRD|1|1|C|2557
9SRD|1|1|A|2558
9SRD|1|1|A|2559
9SRD|1|1|G|2560
9SRD|1|1|G|2561
9SRD|1|1|G|2562
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BN
- Large ribosomal subunit protein uL16
- Chain BO
- Large ribosomal subunit protein uL18
- Chain BR
- Large ribosomal subunit protein eL21
- Chain H
- Dehydrogenase
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