HL_9SRD_063

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

C(4AC)GAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_063 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2506

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SRD|1|1|C|2607
9SRD|1|1|4AC|2608
9SRD|1|1|G|2609
9SRD|1|1|A|2610
9SRD|1|1|A|2611
9SRD|1|1|A|2612
9SRD|1|1|G|2613
9SRD|1|1|G|2614

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BO

Large ribosomal subunit protein uL18

Chain BR

Large ribosomal subunit protein eL21

Chain Bj

Large ribosomal subunit protein eL42