HL_9SRD_064

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCC(4AC)GGUGG

Length

9 nucleotides

Bulged bases

9SRD|1|1|C|2640

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_064 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.1547

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9SRD|1|1|C|2639
9SRD|1|1|C|2640
9SRD|1|1|C|2641
9SRD|1|1|4AC|2642
9SRD|1|1|G|2643
9SRD|1|1|G|2644
9SRD|1|1|U|2645
9SRD|1|1|G|2646
9SRD|1|1|G|2647

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15

Chain Bj

Large ribosomal subunit protein eL42