HL_9SRD_065

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AGCCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_065 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.205

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9SRD|1|1|A|2703
9SRD|1|1|G|2704
9SRD|1|1|C|2705
9SRD|1|1|C|2706
9SRD|1|1|C|2707
9SRD|1|1|A|2708
9SRD|1|1|U|2709
9SRD|1|1|A|2710
9SRD|1|1|U|2711

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BN

Large ribosomal subunit protein uL16

Chain Bg

Large ribosomal subunit protein eL40