HL_9SRD_066

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGCAGCAG

Length

8 nucleotides

Bulged bases

9SRD|1|1|G|2761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_066 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.2642

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9SRD|1|1|U|2760
9SRD|1|1|G|2761
9SRD|1|1|C|2762
9SRD|1|1|A|2763
9SRD|1|1|G|2764
9SRD|1|1|C|2765
9SRD|1|1|A|2766
9SRD|1|1|G|2767

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BF

Large ribosomal subunit protein uL6

Chain Bg

Large ribosomal subunit protein eL40