HL_9SRD_100

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUCAUCAUC

Length

9 nucleotides

Bulged bases

9SRD|1|2|C|1333, 9SRD|1|2|U|1338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|G|1331
9SRD|1|2|U|1332
9SRD|1|2|C|1333
9SRD|1|2|A|1334
9SRD|1|2|U|1335
9SRD|1|2|C|1336
9SRD|1|2|A|1337
9SRD|1|2|U|1338
9SRD|1|2|C|1339

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AK

30S ribosomal protein S9

Chain AL

30S ribosomal protein S10

Chain AP

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein S19e