HL_9SRE_004
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- UGGCAAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRE_004 not in the Motif Atlas
- Homologous match to HL_4V9F_001
- Geometric discrepancy: 0.1275
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9SRE|1|1|U|173
9SRE|1|1|G|174
9SRE|1|1|G|175
9SRE|1|1|C|176
9SRE|1|1|A|177
9SRE|1|1|A|178
9SRE|1|1|G|179
9SRE|1|1|C|180
9SRE|1|1|U|181
9SRE|1|1|G|182
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BT
- Large ribosomal subunit protein uL23
- Chain BW
- Large ribosomal subunit protein uL29
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
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