HL_9SRE_009

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9SRE|1|1|A|300, 9SRE|1|1|A|303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRE_009 not in the Motif Atlas

Homologous match to HL_4V9F_006

Geometric discrepancy: 0.1042

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9SRE|1|1|G|298
9SRE|1|1|A|299
9SRE|1|1|A|300
9SRE|1|1|A|301
9SRE|1|1|C|302
9SRE|1|1|A|303
9SRE|1|1|U|304
9SRE|1|1|C|305

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15

Chain Bj

Large ribosomal subunit protein eL42