HL_9SRE_045

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

(4AC)GACACAG

Length

8 nucleotides

Bulged bases

9SRE|1|1|A|1889, 9SRE|1|1|A|1891

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRE_045 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.0951

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9SRE|1|1|4AC|1885
9SRE|1|1|G|1886
9SRE|1|1|A|1887
9SRE|1|1|C|1888
9SRE|1|1|A|1889
9SRE|1|1|C|1890
9SRE|1|1|A|1891
9SRE|1|1|G|1892

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BS

Large ribosomal subunit protein uL22

Chain Be

Large ribosomal subunit protein eL37

Chain Bf

Large ribosomal subunit protein eL39