HL_9SRE_063

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

C(4AC)GAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRE_063 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2494

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SRE|1|1|C|2607
9SRE|1|1|4AC|2608
9SRE|1|1|G|2609
9SRE|1|1|A|2610
9SRE|1|1|A|2611
9SRE|1|1|A|2612
9SRE|1|1|G|2613
9SRE|1|1|G|2614

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain BO

Large ribosomal subunit protein uL18

Chain BR

Large ribosomal subunit protein eL21

Chain Bj

Large ribosomal subunit protein eL42