HL_9SRE_079

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|C|329
9SRE|1|2|A|330
9SRE|1|2|C|331
9SRE|1|2|U|332
9SRE|1|2|G|333
9SRE|1|2|A|334
9SRE|1|2|G|335
9SRE|1|2|A|336
9SRE|1|2|C|337
9SRE|1|2|A|338
9SRE|1|2|C|339
9SRE|1|2|G|340
9SRE|1|2|G|341
9SRE|1|2|G|342

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AG

30S ribosomal protein S6e

Chain AJ

30S ribosomal protein S8e