HL_9SRO_010

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRO_010 not in the Motif Atlas

Homologous match to HL_6CZR_216

Geometric discrepancy: 0.2169

The information below is about HL_6CZR_216

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SRO|1|A|C|522
9SRO|1|A|A|523
9SRO|1|A|G|524
9SRO|1|A|C|525
9SRO|1|A|C|526
9SRO|1|A|G7M|527

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12