HL_9SRO_030
3D structure
- PDB id
- 9SRO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUCGAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRO_030 not in the Motif Atlas
- Homologous match to HL_4YYE_003
- Geometric discrepancy: 0.2043
- The information below is about HL_4YYE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9SRO|1|Y|G|62
9SRO|1|Y|U|63
9SRO|1|Y|U|64
9SRO|1|Y|C|65
9SRO|1|Y|G|66
9SRO|1|Y|A|67
9SRO|1|Y|G|68
9SRO|1|Y|U|69
9SRO|1|Y|C|70
Current chains
- Chain Y
- A/P-tRNA-Leu
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: