HL_9SRO_060

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRO_060 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.198

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9SRO|1|a|G|978
9SRO|1|a|A|979
9SRO|1|a|A|980
9SRO|1|a|A|981
9SRO|1|a|C|982
9SRO|1|a|A|983
9SRO|1|a|A|984
9SRO|1|a|C|985

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21

Chain y

Large ribosomal subunit protein uL30