HL_9SS1_008

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS1_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1435

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS1|1|D1|A|320
9SS1|1|D1|A|321
9SS1|1|D1|C|322
9SS1|1|D1|U|323
9SS1|1|D1|G|324
9SS1|1|D1|A|325
9SS1|1|D1|G|326
9SS1|1|D1|A|327
9SS1|1|D1|C|328
9SS1|1|D1|A|329
9SS1|1|D1|C|330
9SS1|1|D1|G|331
9SS1|1|D1|G|332
9SS1|1|D1|U|333

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AS

Small ribosomal subunit protein bS20