HL_9SS1_009

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9SS1|1|D1|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS1_009 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1519

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

9SS1|1|D1|C|342
9SS1|1|D1|U|343
9SS1|1|D1|A|344
9SS1|1|D1|C|345
9SS1|1|D1|G|346
9SS1|1|D1|G|347

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains