HL_9SS1_012

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9SS1|1|D1|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS1_012 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.1731

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9SS1|1|D1|G|462
9SS1|1|D1|U|463
9SS1|1|D1|U|464
9SS1|1|D1|A|465
9SS1|1|D1|A|466
9SS1|1|D1|U|467
9SS1|1|D1|A|468
9SS1|1|D1|C|469
9SS1|1|D1|C|470

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains