HL_9SS1_025

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9SS1|1|D1|C|1136, 9SS1|1|D1|C|1137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS1_025 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3487

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS1|1|D1|G|1134
9SS1|1|D1|U|1135
9SS1|1|D1|C|1136
9SS1|1|D1|C|1137
9SS1|1|D1|G|1138
9SS1|1|D1|G|1139
9SS1|1|D1|C|1140

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AH

Small ribosomal subunit protein uS9