HL_9SS1_029

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9SS1|1|D1|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS1_029 not in the Motif Atlas

Homologous match to HL_6CZR_101

Geometric discrepancy: 0.3375

The information below is about HL_6CZR_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS1|1|D1|G|1356
9SS1|1|D1|A|1357
9SS1|1|D1|U|1358
9SS1|1|D1|C|1359
9SS1|1|D1|A|1360
9SS1|1|D1|G|1361
9SS1|1|D1|A|1362
9SS1|1|D1|A|1363
9SS1|1|D1|U|1364
9SS1|1|D1|G|1365
9SS1|1|D1|C|1366

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AH

Small ribosomal subunit protein uS9