HL_9SS2_006

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9SS2|1|D1|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS2_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2666

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SS2|1|D1|G|259
9SS2|1|D1|G|260
9SS2|1|D1|U|261
9SS2|1|D1|A|262
9SS2|1|D1|A|263
9SS2|1|D1|C|264
9SS2|1|D1|G|265
9SS2|1|D1|G|266
9SS2|1|D1|C|267

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AP

Small ribosomal subunit protein uS17

Chain AS

Small ribosomal subunit protein bS20