HL_9SS2_021

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

9SS2|1|D1|U|965, 9SS2|1|D1|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS2_021 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.3341

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS2|1|D1|G|963
9SS2|1|D1|A|964
9SS2|1|D1|U|965
9SS2|1|D1|G|966
9SS2|1|D1|C|967
9SS2|1|D1|A|968
9SS2|1|D1|A|969
9SS2|1|D1|C|970
9SS2|1|D1|G|971
9SS2|1|D1|C|972

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AH

Small ribosomal subunit protein uS9

Chain AI

Small ribosomal subunit protein uS10

Chain AL

Small ribosomal subunit protein uS13