HL_9SS5_017

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9SS5|1|D2|A|613, 9SS5|1|D2|A|614, 9SS5|1|D2|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_017 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2925

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

9SS5|1|D2|C|611
9SS5|1|D2|G|612
9SS5|1|D2|A|613
9SS5|1|D2|A|614
9SS5|1|D2|U|615
9SS5|1|D2|A|616
9SS5|1|D2|G|617

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BG

Small ribosomal subunit protein bS20