HL_9SS5_021
3D structure
- PDB id
- 9SS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit in rimM-KO with RsfS (+H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUCGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 9SS5|1|D2|C|747, 9SS5|1|D2|A|751, 9SS5|1|D2|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS5_021 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1608
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
9SS5|1|D2|U|744
9SS5|1|D2|G|745
9SS5|1|D2|U|746
9SS5|1|D2|C|747
9SS5|1|D2|G|748
9SS5|1|D2|A|749
9SS5|1|D2|A|750
9SS5|1|D2|A|751
9SS5|1|D2|A|752
9SS5|1|D2|A|753
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- Large ribosomal subunit protein bL32
- Chain B7
- Large ribosomal subunit protein bL34
- Chain BC
- 50S ribosomal protein L3
- Chain BV
- Large ribosomal subunit protein uL22
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