HL_9SS5_027

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUGGCUUAGAAGCAGCCAUC

Length

21 nucleotides

Bulged bases

9SS5|1|D2|U|1061, 9SS5|1|D2|U|1065, 9SS5|1|D2|U|1066, 9SS5|1|D2|A|1067, 9SS5|1|D2|A|1070, 9SS5|1|D2|U|1078

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS5|1|D2|G|1059
9SS5|1|D2|U|1060
9SS5|1|D2|U|1061
9SS5|1|D2|G|1062
9SS5|1|D2|G|1063
9SS5|1|D2|C|1064
9SS5|1|D2|U|1065
9SS5|1|D2|U|1066
9SS5|1|D2|A|1067
9SS5|1|D2|G|1068
9SS5|1|D2|A|1069
9SS5|1|D2|A|1070
9SS5|1|D2|G|1071
9SS5|1|D2|C|1072
9SS5|1|D2|A|1073
9SS5|1|D2|G|1074
9SS5|1|D2|C|1075
9SS5|1|D2|C|1076
9SS5|1|D2|A|1077
9SS5|1|D2|U|1078
9SS5|1|D2|C|1079

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L11

Chain BP

50S ribosomal protein L16