HL_9SS5_051

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9SS5|1|D2|A|2211, 9SS5|1|D2|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS5_051 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.102

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS5|1|D2|G|2209
9SS5|1|D2|U|2210
9SS5|1|D2|A|2211
9SS5|1|D2|A|2212
9SS5|1|D2|U|2213
9SS5|1|D2|C|2214
9SS5|1|D2|C|2215

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains