HL_9SS5_054

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

9SS5|1|D2|G|2308, 9SS5|1|D2|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SS5|1|D2|G|2303
9SS5|1|D2|G|2304
9SS5|1|D2|U|2305
9SS5|1|D2|C|2306
9SS5|1|D2|G|2307
9SS5|1|D2|G|2308
9SS5|1|D2|A|2309
9SS5|1|D2|C|2310
9SS5|1|D2|A|2311
9SS5|1|D2|U|2312
9SS5|1|D2|C|2313

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BE

Large ribosomal subunit protein uL5