HL_9SS6_001

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

9SS6|1|D1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_001 not in the Motif Atlas

Homologous match to HL_6CZR_072

Geometric discrepancy: 0.1538

The information below is about HL_6CZR_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.4

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS6|1|D1|U|12
9SS6|1|D1|U|13
9SS6|1|D1|U|14
9SS6|1|D1|G|15
9SS6|1|D1|A|16
9SS6|1|D1|U|17
9SS6|1|D1|C|18
9SS6|1|D1|A|19
9SS6|1|D1|U|20
9SS6|1|D1|G|21
9SS6|1|D1|G|22

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS5

Chain AK

Small ribosomal subunit protein uS12