HL_9SS6_008

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1439

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS6|1|D1|A|320
9SS6|1|D1|A|321
9SS6|1|D1|C|322
9SS6|1|D1|U|323
9SS6|1|D1|G|324
9SS6|1|D1|A|325
9SS6|1|D1|G|326
9SS6|1|D1|A|327
9SS6|1|D1|C|328
9SS6|1|D1|A|329
9SS6|1|D1|C|330
9SS6|1|D1|G|331
9SS6|1|D1|G|332
9SS6|1|D1|U|333

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AS

Small ribosomal subunit protein bS20