HL_9SS6_012

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9SS6|1|D1|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_012 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.1732

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9SS6|1|D1|G|462
9SS6|1|D1|U|463
9SS6|1|D1|U|464
9SS6|1|D1|A|465
9SS6|1|D1|A|466
9SS6|1|D1|U|467
9SS6|1|D1|A|468
9SS6|1|D1|C|469
9SS6|1|D1|C|470

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains