HL_9SS6_013

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_013 not in the Motif Atlas

Homologous match to HL_6CZR_216

Geometric discrepancy: 0.225

The information below is about HL_6CZR_216

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SS6|1|D1|C|522
9SS6|1|D1|A|523
9SS6|1|D1|G|524
9SS6|1|D1|C|525
9SS6|1|D1|C|526
9SS6|1|D1|G|527

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12