HL_9SS6_016

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_016 not in the Motif Atlas

Homologous match to HL_6CZR_087

Geometric discrepancy: 0.1755

The information below is about HL_6CZR_087

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9SS6|1|D1|C|726
9SS6|1|D1|G|727
9SS6|1|D1|A|728
9SS6|1|D1|A|729
9SS6|1|D1|G|730
9SS6|1|D1|G|731

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AN

Small ribosomal subunit protein uS15

Chain AT

Small ribosomal subunit protein bS21