HL_9SS6_030

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9SS6|1|D1|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_030 not in the Motif Atlas

Homologous match to HL_6CZR_101

Geometric discrepancy: 0.2107

The information below is about HL_6CZR_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9SS6|1|D1|G|1356
9SS6|1|D1|A|1357
9SS6|1|D1|U|1358
9SS6|1|D1|C|1359
9SS6|1|D1|A|1360
9SS6|1|D1|G|1361
9SS6|1|D1|A|1362
9SS6|1|D1|A|1363
9SS6|1|D1|U|1364
9SS6|1|D1|G|1365
9SS6|1|D1|C|1366

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AH

Small ribosomal subunit protein uS9

Chain AI

Small ribosomal subunit protein uS10

Chain AM

Small ribosomal subunit protein uS14