HL_9SS6_031

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9SS6|1|D1|U|1451, 9SS6|1|D1|C|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_031 not in the Motif Atlas

Geometric match to HL_7D81_001

Geometric discrepancy: 0.3096

The information below is about HL_7D81_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9SS6|1|D1|C|1449
9SS6|1|D1|U|1450
9SS6|1|D1|U|1451
9SS6|1|D1|C|1452
9SS6|1|D1|G|1453
9SS6|1|D1|G|1454

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains