HL_9SS6_039

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

9SS6|1|D2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_039 not in the Motif Atlas

Geometric match to HL_8B0X_039

Geometric discrepancy: 0.1839

The information below is about HL_8B0X_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63151.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

2

Unit IDs

9SS6|1|D2|C|225
9SS6|1|D2|A|226
9SS6|1|D2|A|227
9SS6|1|D2|C|228
9SS6|1|D2|C|229
9SS6|1|D2|G|230

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BO

Large ribosomal subunit protein uL15