HL_9SS6_043

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9SS6|1|D2|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_043 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3053

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS6|1|D2|A|382
9SS6|1|D2|C|383
9SS6|1|D2|A|384
9SS6|1|D2|C|385
9SS6|1|D2|G|386
9SS6|1|D2|U|387
9SS6|1|D2|G|388
9SS6|1|D2|G|389
9SS6|1|D2|U|390
9SS6|1|D2|A|391
9SS6|1|D2|U|392

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28