HL_9SS6_046

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9SS6|1|D2|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_046 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.2008

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9SS6|1|D2|C|487
9SS6|1|D2|G|488
9SS6|1|D2|G|489
9SS6|1|D2|C|490
9SS6|1|D2|G|491
9SS6|1|D2|A|492
9SS6|1|D2|G|493

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BV

Large ribosomal subunit protein uL22