HL_9SS6_048
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9SS6|1|D2|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS6_048 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.1537
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9SS6|1|D2|U|566
9SS6|1|D2|U|567
9SS6|1|D2|U|568
9SS6|1|D2|U|569
9SS6|1|D2|G|570
9SS6|1|D2|U|571
9SS6|1|D2|A|572
9SS6|1|D2|U|573
9SS6|1|D2|A|574
9SS6|1|D2|A|575
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- Large ribosomal subunit protein bL32
- Chain BC
- 50S ribosomal protein L3
- Chain BO
- Large ribosomal subunit protein uL15
- Chain BU
- Large ribosomal subunit protein bL21
Coloring options: