HL_9SS6_052

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_052 not in the Motif Atlas

Geometric match to HL_8B0X_052

Geometric discrepancy: 0.0963

The information below is about HL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9SS6|1|D2|G|712
9SS6|1|D2|G|713
9SS6|1|D2|U|714
9SS6|1|D2|A|715
9SS6|1|D2|A|716
9SS6|1|D2|C|717
9SS6|1|D2|A|718
9SS6|1|D2|C|719

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain AN

Small ribosomal subunit protein uS15

Chain D1

Small subunit ribosomal RNA; SSU rRNA