HL_9SS6_054

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9SS6|1|D2|A|781, 9SS6|1|D2|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_054 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1663

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

9SS6|1|D2|U|779
9SS6|1|D2|G|780
9SS6|1|D2|A|781
9SS6|1|D2|A|782
9SS6|1|D2|A|783
9SS6|1|D2|G|784
9SS6|1|D2|G|785

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2