HL_9SS6_057

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

9SS6|1|D2|U|958, 9SS6|1|D2|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_057 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1671

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9SS6|1|D2|U|955
9SS6|1|D2|G|956
9SS6|1|D2|C|957
9SS6|1|D2|U|958
9SS6|1|D2|A|959
9SS6|1|D2|A|960
9SS6|1|D2|C|961
9SS6|1|D2|G|962

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BP

50S ribosomal protein L16

Chain D3

5S ribosomal RNA; 5S rRNA