HL_9SS6_066

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9SS6|1|D2|U|1396, 9SS6|1|D2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_066 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3581

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9SS6|1|D2|G|1389
9SS6|1|D2|U|1390
9SS6|1|D2|U|1391
9SS6|1|D2|A|1392
9SS6|1|D2|A|1393
9SS6|1|D2|U|1394
9SS6|1|D2|A|1395
9SS6|1|D2|U|1396
9SS6|1|D2|U|1397
9SS6|1|D2|C|1398

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BW

Large ribosomal subunit protein uL23