HL_9SS6_074

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

9SS6|1|D2|U|1729, 9SS6|1|D2|C|1730, 9SS6|1|D2|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_074 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3339

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9SS6|1|D2|C|1727
9SS6|1|D2|C|1728
9SS6|1|D2|U|1729
9SS6|1|D2|C|1730
9SS6|1|D2|G|1731
9SS6|1|D2|C|1732
9SS6|1|D2|G|1733

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains