HL_9SS6_088

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_088 not in the Motif Atlas

Geometric match to HL_8B0X_084

Geometric discrepancy: 0.0554

The information below is about HL_8B0X_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9SS6|1|D2|U|2356
9SS6|1|D2|G|2357
9SS6|1|D2|A|2358
9SS6|1|D2|C|2359
9SS6|1|D2|G|2360
9SS6|1|D2|G|2361

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B0

Large ribosomal subunit protein bL27

Chain B8

Large ribosomal subunit protein bL35

Chain BO

Large ribosomal subunit protein uL15