HL_9SS6_096

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_096 not in the Motif Atlas

Homologous match to HL_7A0S_064

Geometric discrepancy: 0.1345

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9SS6|1|D2|U|2701
9SS6|1|D2|G|2702
9SS6|1|D2|C|2703
9SS6|1|D2|C|2704
9SS6|1|D2|A|2705
9SS6|1|D2|A|2706

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BQ

Large ribosomal subunit protein bL17