HL_9SS6_101
3D structure
- PDB id
- 9SS6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from RimM-KO
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 9SS6|1|D3|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS6_101 not in the Motif Atlas
- Homologous match to HL_4V9F_071
- Geometric discrepancy: 0.2439
- The information below is about HL_4V9F_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59381.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9SS6|1|D3|C|38
9SS6|1|D3|A|39
9SS6|1|D3|U|40
9SS6|1|D3|G|41
9SS6|1|D3|C|42
9SS6|1|D3|C|43
9SS6|1|D3|G|44
Current chains
- Chain D3
- 5S Ribosomal RNA
Nearby chains
- Chain B4
- Large ribosomal subunit protein bL31A
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BR
- Large ribosomal subunit protein uL18
- Chain D2
- Large subunit ribosomal RNA; LSU rRNA
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