HL_9SX2_006

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9SX2|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SX2_006 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.305

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SX2|1|A|G|259
9SX2|1|A|G|260
9SX2|1|A|U|261
9SX2|1|A|A|262
9SX2|1|A|A|263
9SX2|1|A|C|264
9SX2|1|A|G|265
9SX2|1|A|G|266
9SX2|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20