HL_9SX2_008
3D structure
- PDB id
- 9SX2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S Doxycycline Bound E. coli Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SX2_008 not in the Motif Atlas
- Homologous match to HL_6CZR_079
- Geometric discrepancy: 0.1615
- The information below is about HL_6CZR_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.2
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9SX2|1|A|A|320
9SX2|1|A|A|321
9SX2|1|A|C|322
9SX2|1|A|U|323
9SX2|1|A|G|324
9SX2|1|A|A|325
9SX2|1|A|G|326
9SX2|1|A|A|327
9SX2|1|A|C|328
9SX2|1|A|A|329
9SX2|1|A|C|330
9SX2|1|A|G|331
9SX2|1|A|G|332
9SX2|1|A|U|333
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain T
- Small ribosomal subunit protein bS20
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