HL_9SX2_018

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9SX2|1|A|U|842, 9SX2|1|A|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SX2_018 not in the Motif Atlas

Geometric match to HL_9H3G_024

Geometric discrepancy: 0.3485

The information below is about HL_9H3G_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9SX2|1|A|C|840
9SX2|1|A|C|841
9SX2|1|A|U|842
9SX2|1|A|U|843
9SX2|1|A|G|844
9SX2|1|A|A|845
9SX2|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain R

Small ribosomal subunit protein bS18